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Abstract. Long-term tall-tower eddy-covariance (EC) measurements have been recently established in three European pilot cities as part of the ICOS-Cities project. We conducted a comparison of EC software to ensure a reliable generation of interoperable flux estimates, which is the prerequisite for avoiding methodological biases and improving the comparability of the results. We analyzed datasets covering 5 months collected from EC tall-tower installations located in urbanized areas of Munich, Zurich, and Paris. Fluxes of sensible heat, latent heat, and CO2 were calculated using three software packages (i.e., TK3, EddyPro, and eddy4R) to assess the uncertainty of flux estimations attributed to differences in implemented postprocessing schemes. A very good agreement on the mean values and standard deviations was found across all three sites, which can probably be attributed to a uniform instrumentation, data acquisition, and preprocessing. The overall comparison of final flux time series products showed a good but not yet perfect agreement among the three software packages. TK3 and EddyPro both calculated fluxes with low-frequency spectral correction, resulting in better agreement than between TK3 and the eddy4R workflow with disabled low-frequency spectral treatment. These observed flux discrepancies indicate the crucial role of treating low-frequency spectral loss in flux estimation for tall-tower EC systems. 

Single point eddy covariance measurements of the Earth’s surface energy budget frequently identify an imbalance between available energy and turbulent heat fluxes. While this imbalance lacks a definitive explanation, it is nevertheless a persistent finding from single-site measurements; one with implications for atmospheric and ecosystem models. This has led to a push for intensive field campaigns with temporally and spatially distributed sensors to help identify the causes of energy balance non-closure. Here we present results from the Chequamegon Heterogeneous Ecosystem Energy-balance Study Enabled by a High-density Extensive Array of Detectors 2019 (CHEESEHEAD19)—an observational experiment designed to investigate how the Earth’s surface energy budget responds to scales of surface spatial heterogeneity over a forest ecosystem in northern Wisconsin. The campaign was conducted from June–October 2019, measuring eddy covariance (EC) surface energy fluxes using an array of 20 towers and a low-flying aircraft. Across the domain, energy balance residuals were found to be highest during the afternoon, coinciding with the period of surface heterogeneity-driven mesoscale motions. The magnitude of the residual varied across different sites in relation to the vegetation characteristics of each site. Both vegetation height and height variability showed positive relationships with the residual magnitude. During the seasonal transition from latent heat-dominated summer to sensible heat-dominated fall the magnitude of the energy balance residual steadily decreased, but the energy balance ratio remained constant at 0.8. This was due to the different components of the energy balance equation shifting proportionally, suggesting a common cause of non-closure across the two seasons. Additionally, we tested the effectiveness of measuring energy balance using spatial EC. Spatial EC, whereby the covariance is calculated based on deviations from spatial means, has been proposed as a potential way to reduce energy balance residuals by incorporating contributions from mesoscale motions better than single-site, temporal EC. Here we tested several variations of spatial EC with the CHEESEHEAD19 dataset but found little to no improvement to energy balance closure, which we attribute in part to the challenging measurement requirements of spatial EC. 

Environmental observation networks, such as AmeriFlux, are foundational for monitoring ecosystem response to climate change, management practices, and natural disturbances; however, their effectiveness depends on their representativeness for the regions or continents. We proposed an empirical, time series approach to quantify the similarity of ecosystem fluxes across AmeriFlux sites. We extracted the diel and seasonal characteristics (i.e., amplitudes, phases) from carbon dioxide, water vapor, energy, and momentum fluxes, which reflect the effects of climate, plant phenology, and ecophysiology on the observations, and explored the potential aggregations of AmeriFlux sites through hierarchical clustering. While net radiation and temperature showed latitudinal clustering as expected, flux variables revealed a more uneven clustering with many small (number of sites < 5), unique groups and a few large (> 100) to intermediate (15–70) groups, highlighting the significant ecological regulations of ecosystem fluxes. Many identified unique groups were from under-sampled ecoregions and biome types of the International Geosphere-Biosphere Programme (IGBP), with distinct flux dynamics compared to the rest of the network. At the finer spatial scale, local topography, disturbance, management, edaphic, and hydrological regimes further enlarge the difference in flux dynamics within the groups. Nonetheless, our clustering approach is a data-driven method to interpret the AmeriFlux network, informing future cross-site syntheses, upscaling, and model-data benchmarking research. Finally, we highlighted the unique and underrepresented sites in the AmeriFlux network, which were found mainly in Hawaii and Latin America, mountains, and at under- sampled IGBP types (e.g., urban, open water), motivating the incorporation of new/unregistered sites from these groups. 

Abstract. Global change research demands a convergence among academic disciplines to understand complex changes in Earth system function. Limitations related to data usability and computing infrastructure, however, present barriers to effective use of the research tools needed for this cross-disciplinary collaboration. To address these barriers, we created a computational platform that pairs meteorological data and site-level ecosystem characterizations from the National Ecological Observatory Network (NEON) with the Community Terrestrial System Model (CTSM) that is developed with university partners at the National Center for Atmospheric Research (NCAR). This NCAR–NEON system features a simplified user interface that facilitates access to and use of NEON observations and NCAR models. We present preliminary results that compare observed NEON fluxes with CTSM simulations and describe how the collaboration between NCAR and NEON that can be used by the global change research community improves both the data and model. Beyond datasets and computing, the NCAR–NEON system includes tutorials and visualization tools that facilitate interaction with observational and model datasets and further enable opportunities for teaching and research. By expanding access to data, models, and computing, cyberinfrastructure tools like the NCAR–NEON system will accelerate integration across ecology and climate science disciplines to advance understanding in Earth system science and global change. 

Abstract. During March–June 2017 emissions of nitrogen oxides were measured via eddy covariance at the British Telecom Tower in central London, UK. Through the use of a footprint model the expected emissions were simulated from the spatially resolved National Atmospheric Emissions Inventory for 2017 and compared with the measured emissions. These simulated emissions were shown to underestimate measured emissions during the daytime by a factor of 1.48, but they agreed well overnight. Furthermore, underestimations were spatially mapped, and the areas around the measurement site responsible for differences in measured and simulated emissions were inferred. It was observed that areas of higher traffic, such as major roads near national rail stations, showed the greatest underestimation by the simulated emissions. These discrepancies are partially attributed to a combination of the inventory not fully capturing traffic conditions in central London and both the spatial and temporal resolution of the inventory not fully describing the high heterogeneity of the urban centre. Understanding of this underestimation may be further improved with longer measurement time series to better understand temporal variation and improved temporal scaling factors to better simulate sub-annual emissions. 

Solar-Induced Chlorophyll Fluorescence (SIF) can provide key information about the state of photosynthesis and offers the prospect of defining remote sensing-based estimation of Gross Primary Production (GPP). There is strong theoretical support for the link between SIF and GPP and this relationship has been empirically demonstrated using ground-based, airborne, and satellite-based SIF observations, as well as modeling. However, most evaluations have been based on monthly and annual scales, yet the GPP:SIF relations can be strongly influenced by both vegetation structure and physiology. At the monthly timescales, the structural response often dominates but short-term physiological variations can strongly impact the GPP:SIF relations. Here, we test how well SIF can predict the inter-daily variation of GPP during the growing season and under stress conditions, while taking into account the local effect of sites and abiotic conditions. We compare the accuracy of GPP predictions from SIF at different timescales (half-hourly, daily, and weekly), while evaluating effect of adding environmental variables to the relationship. We utilize observations for years 2018–2019 at 31 mid-latitudes, forested, eddy covariance (EC) flux sites in North America and Europe and use TROPOMI satellite data for SIF. Our results show that SIF is a good predictor of GPP, when accounting for inter-site variation, probably due to differences in canopy structure. Seasonally averaged leaf area index, fraction of absorbed photosynthetically active radiation (fPAR) and canopy conductance provide a predictor to the site-level effect. We show that fPAR is the main factor driving errors in the linear model at high temporal resolution. Adding water stress indicators, namely canopy conductance, to a multi-linear SIF-based GPP model provides the best improvement in the model precision at the three considered timescales, showing the importance of accounting for water stress in GPP predictions, independent of the SIF signal. SIF is a promising predictor for GPP among other remote sensing variables, but more focus should be placed on including canopy structure, and water stress effects in the relationship, especially when considering intra-seasonal, and inter- and intra-daily resolutions. 

Abstract. The observing system design of multidisciplinary fieldmeasurements involves a variety of considerations on logistics, safety, andscience objectives. Typically, this is done based on investigator intuitionand designs of prior field measurements. However, there is potential forconsiderable increases in efficiency, safety, and scientific success byintegrating numerical simulations in the design process. Here, we present anovel numerical simulation–environmental response function (NS–ERF)approach to observing system simulation experiments that aidssurface–atmosphere synthesis at the interface of mesoscale and microscalemeteorology. In a case study we demonstrate application of the NS–ERFapproach to optimize the Chequamegon Heterogeneous Ecosystem Energy-balanceStudy Enabled by a High-density Extensive Array of Detectors 2019(CHEESEHEAD19). During CHEESEHEAD19 pre-field simulation experiments, we considered theplacement of 20 eddy covariance flux towers, operations for 72 h oflow-altitude flux aircraft measurements, and integration of various remotesensing data products. A 2 h high-resolution large eddy simulationcreated a cloud-free virtual atmosphere for surface and meteorologicalconditions characteristic of the field campaign domain and period. Toexplore two specific design hypotheses we super-sampled this virtualatmosphere as observed by 13 different yet simultaneous observing systemdesigns consisting of virtual ground, airborne, and satellite observations.We then analyzed these virtual observations through ERFs to yield an optimalaircraft flight strategy for augmenting a stratified random flux towernetwork in combination with satellite retrievals. We demonstrate how the novel NS–ERF approach doubled CHEESEHEAD19'spotential to explore energy balance closure and spatial patterning scienceobjectives while substantially simplifying logistics. Owing to its modularextensibility, NS–ERF lends itself to optimizing observing system designs alsofor natural climate solutions, emission inventory validation, urban airquality, industry leak detection, and multi-species applications, among otheruse cases.